* as corresponding author, $ as joint first author


2018 Balmas, E., Rana, B.M.J., Hamilton R.S., Shreeve, N., Kieckbusch, J., Aye, I., Hawkes, D.A., Trotter, S., López-Tello, J., Yong, H., Valenti., S., Sferruzi-Perri, A., Gaccioli, F., McKenzie, A.N.J. & Colucci, F. (2018) Maternal group 2 innate lymphoid cells control fetal growth and protect from endotoxin-induced abortion in mice. [bioRxiv]
Pisapia, L., Hamilton, R.S.$, D’Agostino, V, Pasqualea, B., Strazzullo, M., Provenzano, A., Gianfrani, C. & Del Pozzo, G. (2018) Tristetraprolin/ZFP36 regulates the turnover of autoimmune-associated HLA-DQ mRNAs [bioRxiv]


2018 Turco, M.Y., Gardner, L., Kay, R., Hamilton, R.S., Prater, M., Hollinshead, M., McWhinnie, A., Esposito, L., Fernando, R., Skelton, H., Reimann, F., Gribble, F., Sharkey, A., Marsh, S.G.E., O’Rahilly, S., Hemberger, M., Burton, G.J. and Moffett. A. (2018) Trophoblast organoids as a model for maternal-fetal interactions during human placentation. Nature, 564, 263–267 [DOI]
Bacon, W.A., Hamilton, R.S.$, Yu, Z., Kieckbusch, J., Hawkes, D., Krzak, A., Abell, C., Colucci, F. & Charnock-Jones, D.S. (2018) Single-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice. Frontiers in Immunology, 9:2523 [DOI]
Filipovic, I, Chiossone, L., Vacca, P., Hamilton, R.S., Doisne, J.M., Eberl, G., Walzer, T., Mingari, C., Sharkey, A., Moretta, L., Colucci, F. (2018) Molecular definition of group 1 innate lymphoid cells in the mouse uterus. Nature Communications, 9:1, 4492 [DOI]
Ong, C-K & Hamilton, R.S.* (2018) Constructing Computational Pipelines Encyclopedia of Bioinformatics and Computational Biology, 3, 135-143 [DOI]
Prater, M. & Hamilton, R.S.* (2018) Epigenetics: Analysis of cytosine modifications at single base resolution Encyclopedia of Bioinformatics and Computational Biology, 3, 341-353 [DOI]
2017 Taylor, W.R. & Hamilton, R.S. (2017) Exploring RNA conformational space under sparse distance restraints. Scientific Reports, 7, 44074 [DOI]
2016 Ost, T.W.B. & Hamilton, R.S. (2016) Improved nucleic acid sample analysis using convertible tags, WO Patent App. PCT/GB2015/052,183

[WO 2016016639 A1]
Ost, T.W.B. & Hamilton, R.S. (2016) Improved nucleic acid re-sequencing using a reduced number of identified bases, WO Patent App. PCT/GB2015/053,153

[WO 2016063059 A1]
2014 McDermott, S.M., Yang, L., Halstead, J.M., Hamilton, R.S., Meignin, C. & Davis, I. (2014) Drosophila Syncrip modulates the expression of mRNAs encoding key synaptic proteins required for morphology at the neuromuscular junction. RNA, 20, 1593-1606 [DOI]
Halstead, J.M., Lin, Y.Q., Durraine, L., Hamilton, R.S., Ball, G., Neely, G.G., Bellen, H.J. & Davis, I. (2014). Syncrip/hnRNP Q influences synaptic transmission and regulates BMP signaling at the Drosophila neuro-muscular synapse. Biol Open, 3, 839-849 [DOI]
2013 Taylor, W.R., Hamilton, R.S. & Sadowski, M.I. (2013) Prediction of Contacts from Correlated Sequence Substitutions. Current Opinion in Structural Biology, 23 [DOI]
Pisapia, L., Cicatiello, V., Barba, P., Malanga, D., Maffei, A., Hamilton, R.S. and Del Pozzo, G. (2013) Co-regulated expression of alpha and beta mRNAs encoding HLA-DR surface heterodimers occurs by the MHCII RNA operon. Nucleic Acids Research, 1-15. [DOI]
Hamilton, R.S.*, Ball, G., & Davis, I. (2012) A multidiciplinary approach to mRNA localization. Biophysical approaches to translational control of gene expression. Biophysics for the Life Sciences, Vol 1, 213-233. [DOI] [Amazon]
2012 Soares, D.C., Bradshaw, N.J., Zou, J., Kennaway, C.K., Hamilton, R.S., Chen, Z.A., Wear, M.A., Blackburn, E.A., Bramham, J., Böttcher, B, Millar, J.K., Barlow, P.N., Walkinshaw, M.D., Rappsilber, J., and Porteous, D.J (2012) The mitotic and neurodevelopmentally-critical proteins NDE1 and NDEL1 form dimers, tetramers and polymers with a folded-back structure in solution. Journal of Biological Chemistry, 287, 32381-32393. [DOI]
Ball, G., Parton, R.M., Hamilton, R.S. & Davis, I. (2012) A cell biologist’s guide to high resolution imaging. Methods in Enzymology – Imaging and Spectroscopic Analysis of Living Cells: Optical and Spectroscopic Techniques, 504, 29-55. [DOI] [Amazon]
2011 Parton, R.M., Hamilton, R.S., Ball, G., Yang, L., Cullen, F., Lu, W., Ohkura, H. & Davis, I. (2011) A PAR-1 dependent orientation gradient of dynamic microtubules establishes cell polarity in the Drosophila oocyte. Journal of Cell Biology, 194, 121-135. [DOI] [Biosights Video]
Hamilton, R.S. & Davis, I. (2011) Identifying putative conserved RNA localization signals. Methods in Molecular Biology – RNA Detection and Visualization. Chapter 27, 447-466 [DOI] [Amazon]
2010 Hamilton, R.S.*, Parton, R.M., Oliveira, R.A., Ball, G., Vendra, G., Nasmyth, K. & Davis, I. (2010) ParticleStats: Open source software for the analysis of intracellular particle motility. Nucl. Acids Res. Web Server Edition [DOI]
Oliveira, R.A., Hamilton, R.S., Pauli, A., Davis, I., Nasmyth, K. (2010) Cohesin cleavage and Cdk inhibition trigger formation of daughter nuclei. Nature Cell Biology, 12,185-192. [DOI]
2009 Beckett, M.G., Allton, C.R., Davies, C.T.H., Davis, I., Flynn, J.M., Grant, E.J., Hamilton, R.S., Irving, A.C., Kenway, R.D., Ostrowski, R.H., Perry, J.T., Swedlow, J.R., & Trew, A.S. (2009) Building a scientific data grid with DiGS Phil. Trans. R. Soc. A, 367:1897, 2471-2481. [DOI]
Hamilton, R.S., Hartswood, E., Jones, C., Vendra, G., Van De Bor, V., Finnegan, D., & Davis, I. (2009) A bioinformatics search pipeline, RNA2DSearch, identifies RNA localization elements in Drosophila retrotransposons RNA, 15, 200-207. [DOI]
2008 Pickard, B.S., Knight, H.M., Hamilton, R.S., Soares, D.C., Walker, R., Boyd, J.K.F., Machell, J., Maclean, A., McGhee, K.A., Condie, A., Porteous, D.J., Clair, D., Davis, I., Blackwood, D.H.R. & Muir, W.J. (2008) A common variant in the 3’UTR of the GRIK4 glutamate receptor gene affects transcript abundance and protects against bipolar disorder. PNAS, 105, 14940-14945. [DOI]
2007 Vendra, G., Hamilton, R.S. & Davis, I (2007) Dynactin suppresses the retrograde movement of apically localized mRNA in Drosophila blastoderm embryos. RNA, 13, 1-8. [DOI]
Hamilton, R.S. & Davis, I. (2007) RNA localization signals: deciphering the message with bioinformatics. Semin Cell Dev Biol. 18(2), 178-185. [DOI]

Posters / Abstracts

2019 Wingett, S., Andrews, S., Botta, M., Cairns, Dobnikar, L., Edwards, C., Freire-Pritchett, P., Gibbon, S., Hamilton, R.S., Kessler, N., Krueger, C., Krueger, F., Keitley, D., Lloyd, C., Montgomery, J., Reikine, S., Thiecke, M., Westoby, J., Yuan, U., Zhao, X. (2019) Cambridge Bioinformatics Hackathon 2018. F1000Research, 8:212 [DOI]
2018 Bacon, W., Kieckbusch, J., Hamilton, R., Hawkes, D., Yu, Z., Abell, C., Colucci, F. and Charnock-Jones, D.S. (2018) Coup De T-Cell: Deffective placentation impedes neonatal immunity. Placenta, 69, E20-E20. [DOI]
2017 Wingett, S., Ayres, D., Bagshaw, A., Botta, M., Brown, K., Burge, S., Burren, O., Cortijo, S., Dialdestoro, K., Gogleva, A., Hamilton, R.S., Hu, F., Kayikci, M., Krueger, C., Krueger, F., Manzano, R., Matheson, L., Nguyen, T., Prater, M., Rahmat, R., Rice, P., Rocheteau, E., Samarghitean, C., Samborskyy, M., Stempor, P., Tavares, H., Thiecke, M., Tumescheit, C., Zorin, A. and Andrews, S. (2017) Cambridge Bioinformatics Hackathon 2017. F1000Research, 6, 1942 [DOI]
Bacon. W., Hamilton, R.S., Yu, Z., Abell, C., Hemberger, M. & Charnock-Jones, S. (2017) Pink Doesn’t Exist! – A Tale of Trophoblast Differentiation. Placenta, 57, 255. [DOI]
Prater, M., Stepanova, O., Yung, H., Jauniaux, E., Sharkey, A., Charnock-Jones, S., Burton, G.J., & Hamilton, R.S.* (2017) Transcriptome Analysis of Chorionic Villous Samples from Pre-flow (7-8 weeks) and Post-flow (13-14 weeks) Human Placenta Placenta, 57, 259-260. [DOI]


2006 Hamilton, R.S. (2006) DAROGAN: Enzyme Function Prediction from Multiple Sequence Alignments. PhD Thesis: University of Edinburgh [OCLC]
2000 Hamilton, R.S. (2000) Dividing Up Large Protein Surfaces. MSc Thesis: University of Aberdeen [Aberdeen]
1999 Hamilton, R.S. (1999) 3D Structural Studies Of Drug Binding To Dihydrofolate Reductase. BSc Project: University of Leeds