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RNA Structure

RNA Structure Prediction

Publications:

  • Taylor, W.R., Hamilton, R.S. & Sadowski, M.I. (2013) Prediction of Contacts from Correlated Sequence Substitutions. Current Opinion in Structural Biology, 23. [DOI]
  • Taylor, W.R. & Hamilton, R.S. (2017) Exploring RNA conformational space under sparse distance restraints. Scientific Reports, 7, 44074 [DOI]

    • RNA Structure Searching

    Publications:

  • Pisapia, L., Cicatiello, V., Barba, P., Malanga, D., Maffei, A., Hamilton, R.S. and Del Pozzo, G. (2013) Co-regulated expression of alpha and beta mRNAs encoding HLA-DR surface heterodimers occurs by the MHCII RNA operon. Nucleic Acids Research, 1-15.[DOI]
  • Hamilton, R.S.*, Ball, G., & Davis, I. (2012) A multidiciplinary approach to mRNA localization. Biophysical approaches to translational control of gene expression. Biophysics for the Life Sciences, Vol 1, 213-233.[DOI]
  • Hamilton, R.S. & Davis, I. (2011) Identifying putative conserved RNA localization signals. Methods in Molecular Biology – RNA Detection and Visualization. Chapter 27, 447-466 [DOI]
  • Hamilton, R.S., Hartswood, E., Jones, C., Vendra, G., Van De Bor, V., Finnegan, D., & Davis, I. (2009) A bioinformatics search pipeline, RNA2DSearch, identifies RNA localization elements in Drosophila retrotransposons RNA, 15, 200-207. [DOI]
  • Pickard, B.S., Knight, H.M., Hamilton, R.S., Soares, D.C., Walker, R., Boyd, J.K.F., Machell, J., Maclean, A., McGhee, K.A., Condie, A., Porteous, D.J., Clair, D., Davis, I., Blackwood, D.H.R. & Muir, W.J. (2008) A common variant in the 3’UTR of the GRIK4 glutamate receptor gene affects transcript abundance and protects against bipolar disorder. PNAS, 105, 14940-14945. [DOI]
  • Hamilton, R.S. & Davis, I. (2007) RNA localization signals: deciphering the message with bioinformatics. Semin Cell Dev Biol. 18(2), 178-185. [DOI]